Package: RNAseqQC 0.2.1
RNAseqQC: Quality Control for RNA-Seq Data
Functions for semi-automated quality control of bulk RNA-seq data.
Authors:
RNAseqQC_0.2.1.tar.gz
RNAseqQC_0.2.1.zip(r-4.5)RNAseqQC_0.2.1.zip(r-4.4)RNAseqQC_0.2.1.zip(r-4.3)
RNAseqQC_0.2.1.tgz(r-4.4-any)RNAseqQC_0.2.1.tgz(r-4.3-any)
RNAseqQC_0.2.1.tar.gz(r-4.5-noble)RNAseqQC_0.2.1.tar.gz(r-4.4-noble)
RNAseqQC_0.2.1.tgz(r-4.4-emscripten)RNAseqQC_0.2.1.tgz(r-4.3-emscripten)
RNAseqQC.pdf |RNAseqQC.html✨
RNAseqQC/json (API)
NEWS
# Install 'RNAseqQC' in R: |
install.packages('RNAseqQC', repos = c('https://frederikziebell.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/frederikziebell/rnaseqqc/issues
- T47D - The T47D cell line data of RNA-seq experiment GSE89888
- T47D_diff_testing - Differential expression results corresponding to the T47D data set.
Last updated 4 months agofrom:de030dd850. Checks:OK: 6 WARNING: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 12 2024 |
R-4.5-win | OK | Nov 12 2024 |
R-4.5-linux | WARNING | Nov 12 2024 |
R-4.4-win | OK | Nov 12 2024 |
R-4.4-mac | OK | Nov 12 2024 |
R-4.3-win | OK | Nov 12 2024 |
R-4.3-mac | OK | Oct 13 2024 |
Exports:filter_genesget_gene_idmake_ddsmean_sd_plotplot_biotypesplot_chromosomeplot_geneplot_gene_detectionplot_library_complexityplot_loadingsplot_maplot_pcaplot_pca_scattersplot_sample_clusteringplot_sample_MAsplot_total_countsplot_within_level_sample_MAssave_plots_to_pdf
Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobcachemcirclizecliclueclustercodetoolscolorspaceComplexHeatmapcowplotcpp11crayoncurlDBIdbplyrDelayedArrayDESeq2digestdoParalleldplyrensembldbfansifarverfastmapfilelockforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesGetoptLongggplot2ggpointdensityggrepelGlobalOptionsgluegtablehttrIRangesisobanditeratorsjsonliteKEGGRESTlabelinglambda.rlatticelazyevallifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpatchworkpillarpkgconfigplogrpngProtGenericspurrrR6rappdirsRColorBrewerRcppRcppArmadilloRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalesshapesnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryamlzlibbioc