Changes in version 0.2.1.9000                      

  - Add the possibility to plot different assays in plot_pca() when obj
    is a SummarizedExperiment
  - Add function to plot one boxplot or one ECDF per sample

                 Changes in version 0.2.1 (2024-07-15)                  

                         Changes in version 0.2                         

  - Add the possibility to plot gene expression in plot_pca()
  - plot_pca() and plot_pca_scatters() now detect if the variable to
    color by is continuous or discrete and chooses an appropriate,
    colorblind friendly color scale
  - Add option to plot rasterised points in plot_pca_scatters()
  - It is now possible to plot squared loadings in the plot_loadings()
    function
  - Fix a bug where the distance parameter was ignored in
    plot_sample_clustering()
  - Fix a bug where the annotate_top_n parameter didn't work in
    plot_loadings() when the input was a matrix

                 Changes in version 0.1.4 (2022-06-15)                  

  - Fix of bug in plot_pca() that was introduced in the previous
    version, causing the the feature selection to be circumvented.
  - Add three dots argument to plot_sample_clustering() to modify the
    heatmap
  - Add documentation to plot_sample_clustering() indicating that it can
    be used with an arbitrary SummarizedExperiment object.
  - Improved truncation of too large values in plot_chromosome()

                 Changes in version 0.1.3 (2022-05-27)                  

  - MA plots between replicates better handle missing values
  - chromosome heatmaps are not scaled by default anymore
  - plot_pca better handles missing values by first mean-imputing NAs
    and then selecting top-variable features
  - added a function to make a matrix of PCA scatter plots to plot each
    PC against each other
  - allow to specify a design during make_dds

                 Changes in version 0.1.2 (2022-04-27)                  

  - Fixed issue when the results object fed into plot_ma() contains
    s-values.
  - Add GC content gene annotation.

                 Changes in version 0.1.1 (2022-03-18)                  

  - Fixed some package dependencies by moving ggsci to Imports and
    updating the data vignette.

                 Changes in version 0.1.0 (2022-03-17)                  

  - Initial version